Function reference • Eutropia

All functions

Exoenzyme-class Exoenzyme: Structure of the S4 class "Exoenzyme"

Organism-class Organism: Structure of the S4 class "Organism"

add_compound_gradient(): Add compounds to the growth environment in a gradient

add_compounds(): Add compounds to the growth environment

add_exoenzyme(): Add an exoenzyme to organism and simulation

add_organism(): Add a model/organism to simulation

calc_assortment(): Calculate spatial segregation and assortment

dilute_compounds(): Dilute compounds

growthEnvironment-class growthEnvironment: Structure of the S4 class "growthEnvironment"

growthSimulation-class growthSimulation: Structure of the S4 class "growthSimulation"

init_simulation(): Initialize a growth simulation.

plot_cells(): Plot spatial distribution of cells

plot_compounds(): Plot compound time curves

plot_environment(): Plot spatial distribution of compounds

plot_environment_exoenzymes(): Plot spatial distribution of exoenzymes

plot_growth(): Plot growth curves

run_simulation(): Run simulation

show(<growthSimulation>): Print a short summary of a growth simulation

summary_exchanges(): Summary of uptake / production by organism type