Plots the distribution of cells in a growth simulation.
Usage
plot_cells(
object,
xlim = NULL,
ylim = NULL,
iter = NULL,
scalebar.color = "white",
background.color = "black",
incl.timestamp = TRUE,
legend.position = "bottom",
plot.title = NULL
)Arguments
- object
S4-object of type
growthSimulation.- xlim
Numeric vector of length 2, specifying the x-range to be displayed.
- ylim
Numeric vector of length 2, specifying the y-range to be displayed.
- iter
Positive integer number of the simulation step/iteration to plot the cell distribution. If NULL, current distribution is displayed.
- scalebar.color
Color of the scale bar and its annotation. Default: "white".
- background.color
Color of the growth environment background.
- incl.timestamp
Boolean indicating whether a time stamp should be included in the plot. Default: TRUE
- legend.position
The position of legends ("none", "left", "right", "bottom", "top", or two-element numeric vector), as handled in ggplot2. Default: "bottom"
- plot.title
An optional title written on top of the plot.