Get reaction equations

Nicely formatted reaction equations with compound names or IDs.

Usage

getRxnEquation(
  db,
  rxn,
  highlight = NULL,
  use.ids = FALSE,
  format.style = FALSE
)

Arguments

db

Database of class gapseqDB-class

rxn

Reaction ID(s)

highlight

Compound IDs whose names/IDs should be highlighted in red. (only works if 'format.style' is TRUE)

use.ids

Use compound IDs instead of compound names?

format.style

Should the output be formatted (highlights and grey background for external metabolites)?