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Find reaction(s)

findRxns.Rd

Find a reaction by single or combined criteria.

Usage

findRxns(
  db,
  cpd = NULL,
  cpd.link = "AND",
  ec = NULL,
  pwy = NULL,
  grep.str = NULL,
  global.link = "AND"
)

Arguments

db

Database of class gapseqDB-class

cpd

Compound IDs to look for.

cpd.link

"AND" or "OR". "AND" requires that all IDs in 'cpd.link' occur in a reaction. "OR" requires only one compound to be present.

ec

EC number to look for.

pwy

Pathway ID or search term for pathway name.

grep.str

Regular expression applied to the reaction equation.