Exploring gapseq’s biochemistry database
What is gapseq.biochem?
gapseq.biochem is a small R-package that aims to allow you to explore the biochemistry database behind gapseq.
It is not the gapseq software itself. You can find all information on gapseq here:
- Publication: Genome Biology
- Documentation: ReadTheDocs
- Source code: GitHub
Important note: The biochemistry database in gapseq is derived from ModelSEED (https://modelseed.org/). In order to give credits to the developers and curators of ModelSEED, we strongly encourage you to cite also the publication for the ModelSEED database when you are using gapseq.
Installation
gapseq.biochem is in its development phase. The current development version can be installed using:
# install.packages("devtools")
devtools::install_github("Waschina/gapseq.biochem")If you have not installed devtools yet, just un-comment the first line.