Print reaction(s)

Print the equations of reactions.

Usage

printReaction(model, react, use.ids = FALSE)

Arguments

model

Model of class ModelOrg

react

A character vector specifying the reaction IDs or a integer vector providing the reaction indices in the model.

use.ids

Boolean. Indicating whether metabolite IDs should be printed instead of metabolite names.

Value

A character vector with the individual reaction equations.

Examples

fpath <- system.file("extdata", "e_coli_core.xml", package="cobrar")
mod <- readSBMLmod(fpath)
# print reaction specified by index
printReaction(mod, react = 2)
#> [1] "(1) Pyruvate + (1) Coenzyme A --> (1) Acetyl-CoA + (1) Formate"
# print reaction specified by ID
printReaction(mod, react = "PFL")
#> [1] "(1) Pyruvate + (1) Coenzyme A --> (1) Acetyl-CoA + (1) Formate"
# print reaction with metabolite IDs instead of metabolite names
printReaction(mod, react = "PFL", use.ids = TRUE)
#> [1] "(1) pyr_c + (1) coa_c --> (1) accoa_c + (1) for_c"
# print multiple reactions at once
printReaction(mod, react = c(2,8))
#> [1] "(1) Pyruvate + (1) Coenzyme A --> (1) Acetyl-CoA + (1) Formate"
#> [2] "(1) D-Glycerate 2-phosphate <==> (1) 3-Phospho-D-glycerate"