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Finds all exchange reactions within a (community) model and report them in a data frame.

Usage

findExchReact(model)

# S4 method for class 'ModelOrg'
findExchReact(model)

# S4 method for class 'ModelComm'
findExchReact(model)

Arguments

model

Model of class ModelOrg or ModelComm

Value

If 'model' is of class ModelOrg, a data.frame is returned stating all exchange reaction IDs, their index in the reaction list, the respective metabolite id, name, and index in the metabolite list. If the model is of class ModelComm, the resulting data.frame contains the community exchange reactions and the organism-specific exchange reaction. The latter are exchange reactions, that connect extracellular metabolites of the organism metabolic network models with the shared extracellular space.